Database

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• AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences
• Antibodypedia Welcome to Antibodypedia, an open-access database of publicly available antibodies against human protein targets.
• ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano’ et al. 2006), and to the functional annotation of predicted isoforms.
• Biobase – Biological databases, bioinformatics tools, and consulting in gene …
• BioGRID – The Biological General Repository for Interaction Datasets is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans.
• Breast Cancer Database
• ClinicalTrials.gov is a registry and results database of federally and privately supported clinical trials conducted in the United States and around the world.
• CSA (Catalytic Site Atlas) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure.
• Databases at the EBI (European Bioinformatics Institute)
• DATABASE LINKING – Elsevier
• Database of Cell Signaling – This database provides information on the components of cellular signaling pathways and their relations to one another, which are organized into pathways called Connections Maps, which serve as ..
• DGVa (Database of Genomic Variants archive) – genomic variants
• DIP database catalogs experimentally determined interactions between proteins.
• EBIMed is a web application that combines Information Retrieval and Extraction from Medline.
• EGA (European Genome-phenome Archive) – genetic and phenotypic data
• e-Mouse Atlas Project
• Embase/biomedical answers – With over 24 million indexed records and more than
• EMBL – EBI (European Bioinformatics Institute) – DATABASE
• ENA (European Nucleotide Archive) – primary nucleotide data, incorporating EMBL-Bank
• ENCODE – Encyclopedia of DNA Elements
• Engineering Village is the premier web-based discovery platform meeting the information needs of the engineering community.
• Ensembl – vertebrate genomes
• Ensembl Genomes – non – vertebrate genomes
• Getentry – DNA Data Base of Japan (DDBJ)
• GPCR : New Human GPCR modeling and virtual screening database is constructed using FINDSITEX: FINDSITEX is applied to 998 identified human GPCRs.
• HPRD – Human Protein Reference Database
• illumin8 is a powerful research tool that provides valuable input for scoping opportunities when exploring new markets, products and technologies in the critical early stages of the innovation process.
• IMGT/HLA – HLA system sequences
• InterMine is an open source data warehouse built specifically for the integration and analysis of complex biological data.
• IntAct provides a freely available, open source database system and analysis tools for molecular interaction data.
• InterPro – predictive protein signatures
• IntEnz (Integrated relational Enzyme database) – enzyme data
• MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.
• Mouse Genome Informatics
• MINT, the Molecular INTeraction database. MINT focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators.
• Patents – patent data resource
• Pathway Interaction Database – Biomolecular interactions and cellular processes assembled into authoritative human signaling pathways
• ProFunc – biochemical function prediction
• PDBe (Protein Data Bank in Europe) – biological macromolecular structures
• PDBSum – protein structure summaries
• PharmaPendium – The only online resource able to search all FDA/CDER/FOI archived FDA drug approval …
• PPD – Plasma Proteome Database
• PRIDE (PRoteomics IDEntifications) – proteomics data repository
• PDB – Protein Data Bank
• Protein Databases
• PudMed/MEDLINE – US National Library of Medicine – National Institutes of Health
• Reactome is a free, open-source, curated and peer reviewed pathway database.
• Roadmap Epigenomics Mapping Consortium – NIH
• RGD – Rat Genome Database
• SciVerse Scopus – The largest abstract and citation database of research literature and quality web sources covering nearly 18,000 titles from more than 5,000 publishers.
• Sciencedirect
• Scirus – The most comprehensive science-specific search engine on the Internet
• ST NetWatch: Model Organisms
• ST NetWatch: Bioinformatics Resources
• ST NetWatch: Modeling Tools
• STRING is a database of known and predicted protein interactions.
• SVA (Sequence Version Archive) – historical repository of EMBL-Bank entries
• The Wellcome Trust Sanger Institute has developed – often with colleagues outside the institute – a suite of databases to help researchers. These can be accessed from this page.
• UCSC Genome Bioinformatics
• UniProt
• UniProt-GOA (Gene Ontology Annotation) – GO annotations to UniProtKB
• UniSave – historical repository of UniProtKB entry versions
• Xenbase: Xenopus laevis and Xenopus tropicalis biology and genomics resource
• ZFIN: The Zebrafish Model Organism Database